Dataset Overview | National Centers for Environmental Information (NCEI)

Diet and stable isotope (bulk-tissue and compound specific amino acid) data of larval and juvenile deep pelagic Paralepidid fishes collected during multiple cruises in the northern Gulf of Mexico from 2010-09-10 to 2011-08-23 (NCEI Accession 0245830)

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A series of Natural Resource Damage Assessment (NRDA) cruises were conducted in 2010 and 2011 to evaluate the distribution and densities of ichthyoplankton and other zooplankton in Gulf of Mexico waters potentially affected by the Deepwater Horizon Oil Spill (DWHOS) and in surrounding areas. This dataset includes larval fish (family: Paralepididae) diet and stable isotope data from samples collected on NRDA plankton and NRDA Nekton surveys, 2010-2011. It includes data for ichthyoplankton specimens (taxonomic identification, length, weight, stable carbon and nitrogen values, compound specific amino acid values) and their corresponding diets (prey taxonomic identification, number of individuals, length, weight).

Dataset Citation

Cite as: Gipson, Emily; Wang, Verena; Zapfe, Carley; Dillon, Kevin; Hernandez, Frank (2022). Diet and stable isotope (bulk-tissue and compound specific amino acid) data of larval and juvenile deep pelagic Paralepidid fishes collected during multiple cruises in the northern Gulf of Mexico from 2010-09-10 to 2011-08-23 (NCEI Accession 0245830). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0245830. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0245830

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Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	CSV Excel Text
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2010-09-10 to 2011-08-23
Spatial Bounding Box Coordinates	West: -92.5 East: -85.5 South: 27 North: 29.16
Spatial Coverage Map

General Documentation

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Descriptive Information
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Associated Resources

Diet and stable isotope (bulk-tissue and compound specific amino acid) data of larval and juvenile deep pelagic Paralepidid fishes collected in the northern Gulf of Mexico during the Deepwater Horizon (DWH) Natural Resource Damage Assessment (NRDA)
- https://doi.org/10.7266/W39GXEG1 (download)
  GRIIDC Data Webpage UDI:R6.x815.000:0035
Zapfe, Carley; Wang, Verena; Hernandez, Frank (2021). MOCNESS profile and ichthyoplankton and decapod specimen identification data collected during NRDA Plankton Survey Nick Skansi 9 (NS9) in the northern Gulf of Mexico from 2011-04-17 to 2011-06-26 (NCEI Accession 0239999). NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0239999.
- https://www.ncei.noaa.gov/archive/accession/0239999
  Other related cruise data collected during the Deepwater Horizon (DWH) Natural Resource Damage Assessment (NRDA) projects between 2010 and 2011
Zapfe, Carley; Wang, Verena; Hernandez, Frank (2021). MOCNESS profile and ichthyoplankton and decapod specimen identification data collected during NRDA Plankton Survey Nick Skansi PC3 (NSPC3) in the northern Gulf of Mexico from 2010-09-25 to 2010-10-03 (NCEI Accession 0240416). NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0240416.
- https://www.ncei.noaa.gov/archive/accession/0240416
  Other related cruise data collected during the Deepwater Horizon (DWH) Natural Resource Damage Assessment (NRDA) projects between 2010 and 2011
Zapfe, Carley; Wang, Verena; Hernandez, Frank (2021). MOCNESS profile and ichthyoplankton and decapod specimen identification data collected during NRDA Plankton Survey Nick Skansi PC4 (NSPC4) in the northern Gulf of Mexico from 2010-10-16 to 2010-10-24 (NCEI Accession 0241617). NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0241617.
- https://www.ncei.noaa.gov/archive/accession/0241617
  Other related cruise data collected during the Deepwater Horizon (DWH) Natural Resource Damage Assessment (NRDA) projects between 2010 and 2011

Publication Dates	publication: 2022-03-21
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Supplemental Information	Data parameters and units: Three separate excel files are present: Gut Content Data; Bulk SI Results; and CSIA Results. Gut Content Data: Fish Sample ID [The full sample ID for each individual fish specimen (Hernandez number + Fish ID for plankton; NRDA Sample ID + Fish ID for nekton)]; NRDA Sample ID [Unique identifier for each depth discrete net sample assigned during Deep Water Horizon Natural Resource Damage Assessment sample processing]; Hernandez number [Unique identifier used by the processing laboratory using the number assigned to the sample in the Deepwater Horizon Plankton Assessment Archive (DWHPAA). Number is listed as NA for samples housed by the DWHPAA but not accessioned (nekton)]; Fish ID [Identifier assigned to each specimen removed from the same sample vial for analysis (Taxon - n); not unique among vials]; Taxon [Lowest taxonomic identification]; Cruise Name [Survey vessel]; Cruise No [Number of NRDA survey on above vessel]; Sample Date [Date sample was collected]; Station ID [Station name (B# stations are from the NOAA SEAMAP Grid)]; Latitude [Target station latitude]; Longitude [Target station longitude]; Upper Depth [Minimum depth sampled by net (m)]; Lower Depth [Maximum depth sampled by net (m)]; Life Stage [Developmental stage]; Mag [Microscope magnification at the time of length measurement]; SL [Standard length (mm)]; CSIA [Compound specific isotope analysis conducted (Y- Yes, N- No)]; Bulk SI [Bulk tissue stable isotope analysis conducted (Y- Yes, N- No)]; Gut Intact [Whole gut tract intact at the time of removal (Y- Yes, N- No)]; Gut Fullness [Amount of contents found in gut; on a scale of 0-3 with 0 being empty and 3 being 90% full or greater]; Date counted [Date the gut was removed and contents identified]; Teleost [Gut contents - number of teleost fish present]; Cladoceran [Gut contents -number of cladocerans present]; Poecilostomatoid Copepod [Gut contents - number of Poecilostomatoid copepods present]; General Copepod [Gut contents - number of general (unidentifiable) copepods present]; Invert Egg [Gut contents - number of invertebrate eggs present]; Mouth Contents Present [Prey items detected in mouth cavity, but not included in gut content counts (Y- Yes, N- No)]. Bulk SI Results: Combined Fish ID [Fish specimen ID (or combined fish ID where necessary, see 'Bulk SI Sample ID Key' for combined fish details); 'Gut Contents' indicates stable isotope analysis of gut contents from fish specimen]; 13C [Stable carbon isotopic ratio (δ13C)]; 15N [Stable nitrogen isotopic ratio (δ15N)]; Total fish [Total number of fish in final Combined Fish ID sample, NA if gut contents from a fish specimen were analyzed]; Fish Sample ID 1-10 [Fish Sample ID 1-10; see 'Gut Content Data' for additional information on each specimen; if a single fish was used in the sample, Combined Fish ID is identical to Fish Sample ID #. NA if gut contents from a fish specimen (identified in Combined Fish ID) were analyzed]. CSIA Results: USM ID [Unique identifier for CSIA analysis; See 'CSIA Sample ID Key' for list of individual fish combined in each USM ID]; Alanine [Amino acid stable nitrogen isotopic composition (δ15N)]; Aspartic Acid [Amino acid stable nitrogen isotopic composition (δ15N)]; Glutamic Acid [Amino acid stable nitrogen isotopic composition (δ15N)]; Glycine Amino acid stable nitrogen isotopic composition (δ15N)]; Isoleucine [Amino acid stable nitrogen isotopic composition (δ15N)]; Leucine [Amino acid stable nitrogen isotopic composition (δ15N)]; Lysine [Amino acid stable nitrogen isotopic composition (δ15N)]; Methionine [Amino acid stable nitrogen isotopic composition (δ15N)]; Phenylalanine [Amino acid stable nitrogen isotopic composition (δ15N)]; Proline [Amino acid stable nitrogen isotopic composition (δ15N)]; Serine [Amino acid stable nitrogen isotopic composition (δ15N)]; Threonine [Amino acid stable nitrogen isotopic composition (δ15N)]; Valine [Amino acid stable nitrogen isotopic composition (δ15N)]; USM ID [Unique identifier assigned to the samples for CSIA analysis]; Genus; Spp [Species]; Combined Sample ID [Unique sample ID after fish combination (noted with a 'c'); when sample combination was not required, Combined Sample ID is equivalent to Fish Sample ID 1]; Total fish [Total number of fish in final USM ID sample]; and Fish Sample ID 1-5 [Fish Sample ID 1-5; see 'Gut Content Data' for additional information on each specimen]. Submission Package ID: 22GYW9
Purpose	The purpose of the dataset is to describe diets and trophic linkages for dominant, deep-pelagic larval and juvenile fishes. Data collection methods included gut content analysis, bulk-tissue stable isotope analysis, and compound-specific isotope analysis of amino acids. When combined with trophic data for adult stages, these results will help us understand the ecological role of deep-pelagic fishes and their larvae in connecting the epipelagic with the deep ocean. Ultimately the data will also inform the vertically resolved ecosystem model being developed for this project. The data presented here are a portion of work completed by Emily Gipson (author) as part of her master's thesis requirements.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Gipson, Emily; Wang, Verena; Zapfe, Carley; Dillon, Kevin; Hernandez, Frank (2022). Diet and stable isotope (bulk-tissue and compound specific amino acid) data of larval and juvenile deep pelagic Paralepidid fishes collected during multiple cruises in the northern Gulf of Mexico from 2010-09-10 to 2011-08-23 (NCEI Accession 0245830). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0245830. Accessed [date].
Cited Authors	Gipson, Emily The University of Southern Mississippi Wang, Verena East Carolina University Zapfe, Carley The University of Southern Mississippi Dillon, Kevin The University of Southern Mississippi Hernandez, Frank The University of Southern Mississippi
Principal Investigators	Frank Hernandez The University of Southern Mississippi (USM)
Collaborators	Emily Gipson The University of Southern Mississippi (USM) Verena Wang East Carolina University (ECU) Carley Zapfe The University of Southern Mississippi (USM) Kevin Dillon The University of Southern Mississippi (USM)
Contributors	The University of Southern Mississippi (USM)
Resource Providers	Bipana Sigdel Harte Research Institute for Gulf of Mexico Studies (HRI) Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC)
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Funding Agency: Gulf of Mexico Research Initiative (GoMRI) Funding Agency: Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC)

Theme keywords	NODC DATA TYPES THESAURUS biological data FISH SPECIES FISHERY SURVEY - CATCH MEASUREMENTS - DETAILS ICHTHYOPLANKTON IDENTITY ICHTHYOPLANKTON LENGTH LATITUDE LONGITUDE STOMACH CONTENTS STOMACH CONTENTS - CONTENT WEIGHT STOMACH CONTENTS - FULLNESS STOMACH CONTENTS - PREY COUNT STOMACH CONTENTS - PREY TAXONOMY ZOOPLANKTON NODC OBSERVATION TYPES THESAURUS biological in situ laboratory analyses WMO_CategoryCode oceanography Global Change Master Directory (GCMD) Science Keywords EARTH SCIENCE > AGRICULTURE > AGRICULTURAL AQUATIC SCIENCES > FISHERIES EARTH SCIENCE > BIOLOGICAL CLASSIFICATION EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/VERTEBRATES > FISH EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > PROTISTS > PLANKTON EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON > ZOOPLANKTON Provider Keywords Amino acids Barracudina Compound specific isotope analysis Diet analysis Fish larvae Ichthyoplankton Ichthyoplankton gut contents Ichthyoplankton specimens weight Paralepididae Specimens measurements Stable carbon and nitrogen values Stable isotopes Stable isotopic analysis Taxonomic identification Tropic ecology Zooplankton
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS The University of Southern Mississippi NODC SUBMITTING INSTITUTION NAMES THESAURUS Gulf of Mexico Research Initiative Information & Data Cooperative
Platform keywords	Provider Platform Names M/V Meg Skansi M/V Nick Skansi R/V F.G. Walton Smith
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS mass spectrometer Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS) net scale Global Change Master Directory (GCMD) Instrument Keywords MASS SPECTROMETERS > MASS SPECTROMETERS MOCNESS > MOCNESS Plankton Net NETS > NETS Provider Instruments 1-m^2 Multiple Opening and Closing Net with Environmental Sensing System (MOCNESS) outfitted with nine 0.333mm net 10-m^2 Multiple Opening and Closing Net with Environmental Sensing System (MOCNESS) outfitted with nine 3.00 mm nets Mettler-Toledo MicroAnalytical Balance Ship GPS Thermo Delta V stable isotope ratio mass spectrometer coupled to a Costech 4010 elemental analyzer via a Thermo Confo IV
Place keywords	NODC SEA AREA NAMES THESAURUS Coastal Waters of Gulf of Mexico Gulf of Mexico Global Change Master Directory (GCMD) Location Keywords OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN > GULF OF MEXICO
Project keywords	NODC PROJECT NAMES THESAURUS Deepwater Horizon oil spill event (DWH) Gulf of Mexico Research Initiative (GoMRI) Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC) Provider Project Names Deep-Pelagic Plankton Communities of the Northern Gulf of Mexico: Trophic Ecology, Assemblage Dynamics, and Connectivity with the Upper Ocean Deepwater Horizon Plankton Assessment (DWHPA) Natural Resource Damage Assessment (NRDA)
Keywords	NCEI ACCESSION NUMBER 0245830

Use Constraints	Cite as: Gipson, Emily; Wang, Verena; Zapfe, Carley; Dillon, Kevin; Hernandez, Frank (2022). Diet and stable isotope (bulk-tissue and compound specific amino acid) data of larval and juvenile deep pelagic Paralepidid fishes collected during multiple cruises in the northern Gulf of Mexico from 2010-09-10 to 2011-08-23 (NCEI Accession 0245830). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0245830. Accessed [date].
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2022-03-21T17:15:12Z - NCEI Accession 0245830 v1.1 was published.
Output Datasets	NCEI Accession 0245830 v1.1 NCEI Accession 0245830 v1.1 (download) published 2022-03-21T17:15:12Z

Lineage information for: dataset
Processing Steps	Parameter or Variable: FISHERY SURVEY - CATCH MEASUREMENTS - DETAILS (measured); Units: count; Observation Category: in situ; Sampling Instrument: net; Sampling and Analyzing Method: Multiple Opening/Closing Net Environmental Sensing System (MOCNESS) outfitted with nine 0.333 mm and 3 mm nets.. Parameter or Variable: LATITUDE (measured); Units: decimal degrees; Observation Category: in situ; Sampling Instrument: Ship GPS. Parameter or Variable: LONGITUDE (measured); Units: decimal degrees; Observation Category: in situ; Sampling Instrument: Ship GPS. Parameter or Variable: Specimens measurements (measured); Units: mm; Observation Category: laboratory analysis; Sampling Instrument: Multiple Opening and Closing Net with Environmental Sensing System (MOCNESS); Sampling and Analyzing Method: Fish specimens from the family Paralepididae were selected for trophic analysis based on sampling depth, geographic location, and specimen size (to meet minimum sample requirements for SI analysis). When possible, specimens identified to the family level during the NRDA process were further identified to species by Emily Gipson (USM) and Lauren Jackson (NOAA, NCEI). Specimens were measured for standard length (SL) prior to gut removal. Guts were removed from specimens while minimizing damage to the fish and the gut. Diet analysis for larvae largely followed the methods of Llopiz and Cowen (2008, MEPS 358, 231-244). Stomach contents were identified to the lowest taxonomic resolution, and intact prey were measured.. Parameter or Variable: Stable isotopic analysis (measured); Units: Values; Observation Category: laboratory analysis; Sampling Instrument: Thermo Delta V stable isotope ratio mass spectrometer coupled to a Costech 4010 elemental analyzer via a Thermo Confo IV continu; Sampling and Analyzing Method: Fish were transferred from 85% Ethanol to deionized water, with water changes conducted every 24 hours for 2 days to remove residual preservative. Fish were dried at 60 °C for 24 hrs, and dried fish were ground to powder and were weighed to targeted amounts (1.5 mg for CSIA analysis, 0.3 mg - 0.5mg for bulk stable isotope analysis). When necessary, multiple small fish from the same taxa, location, and depth were combined to reach the required amount of material. Fish for compound specific isotope analysis were sent to the University of California Davis Isotope Facility. Fish for bulk stable isotope analysis were packed into 5 x 9 mm Costech tin capsules. Any remaining ground tissue was archived for future analysis. Compound specific isotope analysis of amino acids was conducted by the University of California Davis Stable Isotope Facility. Bulk tissue stable isotope analysis was conducted at the University of Southern Mississippi Marine Ecosystems Research Laboratory. Samples were analyzed for stable isotope ratios of carbon (δ13C) and nitrogen (δ15N) using a Thermo Delta V stable isotope ratio mass spectrometer coupled to a Costech 4010 elemental analyzer by a Thermo Confo IV continuous flow interface. Isotopic values were calculated relative to conventional standards for each element of interest and expressed in standard delta (δ) notation.. Parameter or Variable: FISH SPECIES (measured); Units: n/a; Observation Category: in situ; Sampling Instrument: Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS); Sampling and Analyzing Method: Archived fish samples from deep-pelagic plankton and nekton cruises conducted during the Deepwater Horizon Natural Resource Damage Assessment (2010 & 2011) were used to conduct trophic (diet and stable isotope) analyses of larval and juvenile deep-pelagic fishes from the family Paralepididae in the northern Gulf of Mexico.. Parameter or Variable: Taxonomic Identification (calculated); Units: text; Observation Category: laboratory analysis; Sampling Instrument: Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS).

Lineage information for: dataset

Processing Steps

Parameter or Variable: FISHERY SURVEY - CATCH MEASUREMENTS - DETAILS (measured); Units: count; Observation Category: in situ; Sampling Instrument: net; Sampling and Analyzing Method: Multiple Opening/Closing Net Environmental Sensing System (MOCNESS) outfitted with nine 0.333 mm and 3 mm nets..
Parameter or Variable: LATITUDE (measured); Units: decimal degrees; Observation Category: in situ; Sampling Instrument: Ship GPS.
Parameter or Variable: LONGITUDE (measured); Units: decimal degrees; Observation Category: in situ; Sampling Instrument: Ship GPS.
Parameter or Variable: Specimens measurements (measured); Units: mm; Observation Category: laboratory analysis; Sampling Instrument: Multiple Opening and Closing Net with Environmental Sensing System (MOCNESS); Sampling and Analyzing Method: Fish specimens from the family Paralepididae were selected for trophic analysis based on sampling depth, geographic location, and specimen size (to meet minimum sample requirements for SI analysis). When possible, specimens identified to the family level during the NRDA process were further identified to species by Emily Gipson (USM) and Lauren Jackson (NOAA, NCEI). Specimens were measured for standard length (SL) prior to gut removal. Guts were removed from specimens while minimizing damage to the fish and the gut. Diet analysis for larvae largely followed the methods of Llopiz and Cowen (2008, MEPS 358, 231-244). Stomach contents were identified to the lowest taxonomic resolution, and intact prey were measured..
Parameter or Variable: Stable isotopic analysis (measured); Units: Values; Observation Category: laboratory analysis; Sampling Instrument: Thermo Delta V stable isotope ratio mass spectrometer coupled to a Costech 4010 elemental analyzer via a Thermo Confo IV continu; Sampling and Analyzing Method: Fish were transferred from 85% Ethanol to deionized water, with water changes conducted every 24 hours for 2 days to remove residual preservative. Fish were dried at 60 °C for 24 hrs, and dried fish were ground to powder and were weighed to targeted amounts (1.5 mg for CSIA analysis, 0.3 mg - 0.5mg for bulk stable isotope analysis). When necessary, multiple small fish from the same taxa, location, and depth were combined to reach the required amount of material. Fish for compound specific isotope analysis were sent to the University of California Davis Isotope Facility. Fish for bulk stable isotope analysis were packed into 5 x 9 mm Costech tin capsules. Any remaining ground tissue was archived for future analysis. Compound specific isotope analysis of amino acids was conducted by the University of California Davis Stable Isotope Facility. Bulk tissue stable isotope analysis was conducted at the University of Southern Mississippi Marine Ecosystems Research Laboratory. Samples were analyzed for stable isotope ratios of carbon (δ13C) and nitrogen (δ15N) using a Thermo Delta V stable isotope ratio mass spectrometer coupled to a Costech 4010 elemental analyzer by a Thermo Confo IV continuous flow interface. Isotopic values were calculated relative to conventional standards for each element of interest and expressed in standard delta (δ) notation..
Parameter or Variable: FISH SPECIES (measured); Units: n/a; Observation Category: in situ; Sampling Instrument: Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS); Sampling and Analyzing Method: Archived fish samples from deep-pelagic plankton and nekton cruises conducted during the Deepwater Horizon Natural Resource Damage Assessment (2010 & 2011) were used to conduct trophic (diet and stable isotope) analyses of larval and juvenile deep-pelagic fishes from the family Paralepididae in the northern Gulf of Mexico..
Parameter or Variable: Taxonomic Identification (calculated); Units: text; Observation Category: laboratory analysis; Sampling Instrument: Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS).

Acquisition Information (collection)
Instrument	mass spectrometer Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS) net scale

Last Modified: 2024-09-09T15:51:02Z
For questions about the information on this page, please email: ncei.info@noaa.gov

Diet and stable isotope (bulk-tissue and compound specific amino acid) data of larval and juvenile deep pelagic Paralepidid fishes collected during multiple cruises in the northern Gulf of Mexico from 2010-09-10 to 2011-08-23 (NCEI Accession 0245830)

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