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Benthic taxa and water quality data from four coral reef sites in the Port of Miami and Key Biscayne, Florida from 2018-12-18 to 2020-07-19 (NCEI Accession 0276830)


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            title:  Benthic taxa and water quality data from four coral reef sites in the Port of Miami and Key Biscayne, Florida from 2018-12-18 to 2020-07-19 (NCEI Accession 0276830)
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        abstract:  This data set is comprised of eight files (comma-separated values) from various data streams related to a monitoring project undertaken in the Port of Miami and a reference reef site off the coast of Key Biscayne, FL from December 2018 through July 2020. The data types involved are both measured and calculated, and include benthic data from analysis of images captured at the study sites, as well as various environmental data types from both deployed instrumentation and collected seawater samples at the study sites. The data types include: benthic taxa, depth, temperature, salinity, pH, dissolved inorganic carbon, total alkalinity, partial pressure of CO2, aragonite saturation state, oxygen, nitrite, nitrate, phosphate, total ammonia, ammonium, orthosilicic acid, and photosynthetically active radiation. Source imagery is not included as part of this archival package.
        purpose:  This dataset is available to the public for a wide variety of uses including scientific research and analysis.
        credit:  Related Funding Agency: US DOC; NOAA; Office of Oceanic and Atmospheric Research
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                    date:  2023-02-14
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/10 AMMONIA (NH3)
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/11 AMMONIUM (NH4)
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/622 ARAGONITE SATURATION STATE
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/48 BENTHIC SPECIES - TAXA IDENTITIES
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/588 DISSOLVED INORGANIC CARBON (DIC)
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/223 NITRATE
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/224 nitrate + nitrite content (concentration)
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/226 NITRITE
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/244 OXYGEN - PERCENT SATURATION
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/263 phosphate
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/272 PHOTOSYNTHETIC ACTIVE RADIATION (PAR)
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/307 SALINITY
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/5 total alkalinity
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/datatype/details/373 WATER TEMPERATURE
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              Anchor:  https://www.ncei.noaa.gov/archive/archive-management-system/OAS/bin/prd/jquery/insttype/details/156 spectrophotometer
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                    name:  Descriptive Information
                    description:  Navigate directly to the URL for a descriptive web page with download links.
                    function:  (CI_OnLineFunctionCode) information
                onLine:  (CI_OnlineResource)
                    linkage: https://www.ncei.noaa.gov/archive/accession/download/276830
                    protocol:  HTTPS
                    applicationProfile:  Web browser
                    name:  HTTPS
                    description:  Navigate directly to the URL for data access and direct download.
                    function:  (CI_OnLineFunctionCode) download
                onLine:  (CI_OnlineResource)
                    linkage: ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0211/0276830/
                    protocol:  FTP
                    applicationProfile:  Any FTP client
                    name:  FTP
                    description:  These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
                    function:  (CI_OnLineFunctionCode) download
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    dataQualityInfo:  (DQ_DataQuality)
        scope:  (DQ_Scope)
            level:  (MD_ScopeCode) dataset
        lineage:  (LI_Lineage)
            processStep:  (LE_ProcessStep)
                description:  NCEI Accession 0276830 v1.1 was published.
                dateTime:
                  DateTime:  2023-03-03T13:02:56Z
                output:  (LE_Source)
                    sourceCitation:  (CI_Citation)
                        title:  NCEI Accession 0276830 v1.1
                        date:  (CI_Date)
                            date: (inapplicable)
                            dateType:  (CI_DateTypeCode) publication
                        citedResponsibleParty:  (CI_ResponsibleParty)
                            individualName: (inapplicable)
                            contactInfo:  (CI_Contact)
                                onlineResource:  (CI_OnlineResource)
                                    linkage: https://www.ncei.noaa.gov/archive/accession/0276830/1.1
                                    protocol:  HTTPS
                                    name:  NCEI Accession 0276830 v1.1
                                    description:  published 2023-03-03T13:02:56Z
                                    function:  (CI_OnLineFunctionCode) download
                            role: (inapplicable)
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    dataQualityInfo:  (DQ_DataQuality)
        scope:  (DQ_Scope)
            level:  (MD_ScopeCode) dataset
        lineage:  (LI_Lineage)
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: BENTHIC SPECIES - TAXA IDENTITIES (measured); Units: count; Observation Category: in situ; Sampling Instrument: camera; Sampling and Analyzing Method: Photomosaics captured then subset of 98 0.25m2 images analyzed using CoralNet per photomosaic..
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: salinityDensitometer (measured); Units: psu; Observation Category: laboratory analysis; Sampling Instrument: densitometer; Sampling and Analyzing Method: Water samples collected and fixed in situ, analyzed in the lab using laboratory densitometer.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: depthM (measured); Units: meter; Observation Category: in situ; Sampling Instrument: swimmer/diver; Sampling and Analyzing Method: Depth measurement at time sample was taken.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: tempField (measured); Units: degrees Celsius; Observation Category: in situ; Sampling Instrument: subsurface automated sampler; Sampling and Analyzing Method: Temperature measurement at time water sample was taken.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: tempSTR (measured); Units: degrees Celsius; Observation Category: in situ; Sampling Instrument: thermistor; Sampling and Analyzing Method: Temperature measurement at time water sample was taken, measure by a separate thermistor instrument.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: dicCorrected (measured); Units: micromole/kilogram; Observation Category: laboratory analysis; Sampling Instrument: Dissolved Inorganic CO2 analyzer; Sampling and Analyzing Method: Water samples collected and fixed in situ, analyzed in the lab using laboratory DIC analyzer.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: taCorrected (measured); Units: micromole/kilogram; Observation Category: laboratory analysis; Sampling Instrument: Total Alkalinity analyzer; Sampling and Analyzing Method: Water samples collected and fixed in situ, analyzed in the lab using laboratory TA analyzer.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: phSpec25 (measured); Units: pH; Observation Category: laboratory analysis; Sampling Instrument: spectrophotometer; Sampling and Analyzing Method: Water samples collected and fixed in situ, analyzed in the lab using laboratory spectrophotometer at 25 degrees celsius.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: phSpecField (calculated); Units: pH; Observation Category: laboratory analysis; Sampling Instrument: spectrophotometer; Sampling and Analyzing Method: Resulting calculated pH of sample when temperature-corrected to field collection temperature.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: phCalc (calculated); Units: pH; Observation Category: laboratory analysis; Sampling Instrument: SeaCarb; Sampling and Analyzing Method: Calculated pH using Seacarb with the constants recommended in Dickson et al..
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: dicCalc (calculated); Units: micromole/kilogram; Observation Category: laboratory analysis; Sampling Instrument: SeaCard; Sampling and Analyzing Method: Calculated DIC using Seacarb with the constants recommended in Dickson et al..
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: pco2 (calculated); Units: micro-atmosphere; Observation Category: laboratory analysis; Sampling Instrument: SeaCarb; Sampling and Analyzing Method: Calculated pCO2 using Seacarb with the constants recommended in Dickson et al..
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: omegaArag (calculated); Units: unitless; Observation Category: laboratory analysis; Sampling Instrument: SeaCarb; Sampling and Analyzing Method: Calculated Aragonite saturation state using Seacarb with the constants recommended in Dickson et al..
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: ta35Friss (calculated); Units: micromole/kilogram; Observation Category: laboratory analysis; Sampling Instrument: calculated; Sampling and Analyzing Method: TA regressed against salinity and then salinity-standardized using a non-zero endmember following Friis et al..
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: dic35Friss (calculated); Units: micromole/kilogram; Observation Category: laboratory analysis; Sampling Instrument: calculated; Sampling and Analyzing Method: DIC regressed against salinity and then salinity-standardized using a non-zero endmember following Friis et al..
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: si (measured); Units: micromole; Observation Category: laboratory analysis; Sampling Instrument: nutrient analyzer; Sampling and Analyzing Method: In situ sample analyzed for orthosilicic acid (H4SiO4).
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: no2 (measured); Units: micromole; Observation Category: laboratory analysis; Sampling Instrument: nutrient analyzer; Sampling and Analyzing Method: In situ sample analyzed for nitrite (NO2−).
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: nn (measured); Units: micromole; Observation Category: laboratory analysis; Sampling Instrument: nutrient analyzer; Sampling and Analyzing Method: In situ sample analyzed for total ammonia (NH3 and NH4+).
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: no3 (measured); Units: micromole; Observation Category: laboratory analysis; Sampling Instrument: nutrient analyzer; Sampling and Analyzing Method: In situ sample analyzed for nitrate (NO3−).
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: nh4 (measured); Units: microlmole; Observation Category: laboratory analysis; Sampling Instrument: nutrient analyzer; Sampling and Analyzing Method: In situ sample analyzed for ammonium (NH4+).
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: po4 (measured); Units: micromole; Observation Category: laboratory analysis; Sampling Instrument: nutrient analyzer; Sampling and Analyzing Method: In situ sample analyzed for phosphate (PO4−3).
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: depth (measured); Units: meter; Observation Category: in situ; Sampling Instrument: CTD; Sampling and Analyzing Method: In situ depth measured via CTD.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: o2Sat (measured); Units: percent saturation; Observation Category: in situ; Sampling Instrument: CTD; Sampling and Analyzing Method: In situ oxygen percent saturation measured via CTD.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: o2MgL (measured); Units: milligram/liter; Observation Category: in situ; Sampling Instrument: CTD; Sampling and Analyzing Method: In situ oxygen mg/L measured via CTD.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: salinity (measured); Units: psu; Observation Category: in situ; Sampling Instrument: CTD; Sampling and Analyzing Method: In situ salinity measured via CTD.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: parCalc (measured); Units: micromole/second; Observation Category: in situ; Sampling Instrument: PAR Sensor; Sampling and Analyzing Method: Photosynthetically Active Radiation level measured in situ.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: parAvg (measured); Units: micromole/second; Observation Category: in situ; Sampling Instrument: PAR Sensor; Sampling and Analyzing Method: Photosynthetically Active Radiation level measured in situ (averaged for time point).
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: phExt (measured); Units: pH; Observation Category: in situ; Sampling Instrument: pH sensor; Sampling and Analyzing Method: Measured pH from external pH probe.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: phInt (measured); Units: pH; Observation Category: in situ; Sampling Instrument: pH sensor; Sampling and Analyzing Method: Measured pH from internal pH probe.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: phTemp (measured); Units: degrees Celsius; Observation Category: in situ; Sampling Instrument: pH sensor; Sampling and Analyzing Method: Measured temperature from pH sensor.
            processStep:  (LE_ProcessStep)
                description:  Parameter or Variable: temperature (measured); Units: degrees Celsius; Observation Category: in situ; Sampling Instrument: thermistor; Sampling and Analyzing Method: In situ temperature measured by thermistor instrument.
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    metadataMaintenance:  (MD_MaintenanceInformation)
        maintenanceAndUpdateFrequency:  (MD_MaintenanceFrequencyCode) asNeeded
        maintenanceNote:  Metadata are developed, maintained and distributed by NCEI. Updates are performed as needed to maintain currentness.
        contact:  (CI_ResponsibleParty)
            organisationName:  NOAA National Centers for Environmental Information
            role:  (CI_RoleCode) custodian
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    acquisitionInformation:  (MI_AcquisitionInformation)
        instrument:  (MI_Instrument)
            identifier:  (MD_Identifier)
                code:  camera
            type:  camera
            description:  An instrument for recording images.
        instrument:  (MI_Instrument)
            identifier:  (MD_Identifier)
                code:  CTD
            type:  CTD
            description:  Conductivity-Temperature-Depth probe
        instrument:  (MI_Instrument)
            identifier:  (MD_Identifier)
                code:  PAR Sensor
            type:  PAR Sensor
            description:  Photosynthetically Active Radiation Sensor The PAR sensor measures global solar radiation from 400 to 700 nm, which approximates the spectral band active in photosynthesis. The response of the instrument falls sharply to zero on either side of this band, and between 400 and 670 nm it increases monotonically from about 50% to 100%. There is no protective glass dome over the receiving surface. Irradiance from the sun passes through a small white visible bandpass filter/diffuser in the shape of a horizontal disk at the top of the instrument. Within the instrument radiation is directed through a series of colored glass filters and onto a silicon photodiode detector. The factory-supplied calibration converts the signal from the detector to a flux of photons in micro-mole (of photons) s-1 m-2. (One micro-mole equals 6.022 E17 photons.) For the solar spectrum, these units may be converted to watts per square meter by dividing by 4.6. (http://www.srrb.noaa.gov/instrument/par.htm)
        instrument:  (MI_Instrument)
            identifier:  (MD_Identifier)
                code:  spectrophotometer
            type:  spectrophotometer
            description:  spectrophotometer, optical spectrometer, spectrograph or spectroscope An optical spectrometer (spectrophotometer, spectrograph or spectroscope) is an instrument used to measure properties of light over a specific portion of the electromagnetic spectrum, typically used in spectroscopic analysis to identify materials. Butler, L. R. P.; Laqua, K. (1995). "Nomenclature, symbols, units and their usage in spectrochemical analysis-IX. Instrumentation for the spectral dispersion and isolation of optical radiation (IUPAC Recommendations 1995)". Pure Appl. Chem. IUPAC. 67 (10): 1725–1744. doi:10.1351/pac199567101725. A spectrometer is the general term for describing a combination of spectral apparatus with one or more detectors to measure the intensity of one or more spectral bands."
        instrument:  (MI_Instrument)
            identifier:  (MD_Identifier)
                code:  swimmer/diver
            type:  swimmer/diver
            description:  not an instrument - use as observation type
        instrument:  (MI_Instrument)
            identifier:  (MD_Identifier)
                code:  thermistor
            type:  thermistor
            description:  electronic temperature sensor thermally sensitive resistor