Benthic cover derived from structure from motion images collected during marine debris surveys at coral reef sites entangled with derelict fishing nets at Pearl and Hermes Atoll in the Northwestern Hawaiian Islands from 2018-09-24 to 2018-10-03 (NCEI Accession 0209247)
The benthic cover and fishing-net related data described in this dataset are derived from the GIS analysis of benthic orthophotos. The source imagery was collected using a Structure from Motion (SfM) approach during in-water marine debris swim surveys conducted by snorkelers in search of derelict fishing nets. Surveys were conducted by the NOAA Fisheries, Ecosystem Sciences Division (ESD) from September 24 to October 3, 2018 at Pearl and Hermes Atoll during an ESD-led marine debris mission to the Northwestern Hawaiian Islands (NWHI) aboard NOAA Ship Oscar Elton Sette. The lagoon at Pearl and Hermes was surveyed equally across the spatial gradient, from locations where derelict fishing nets are common to locations where derelict fishing nets have never been observed.
During the 2018 mission, only a subset of marine debris surveys resulted in a SfM survey. Fishing nets were located during swim surveys and selected for SfM if the net was interacting with coral or hard substrate, the depth of the net was within ~1–4 m of the surface, and the area of the net fit within the 9 sq. meter SFM survey plot. During a SFM survey, a permanent 3 x 3 m plot was established around the center of the fishing net, and the net was photographed using a back and forth swim pattern (“before” photos) for later processing using a SfM approach. The net was then removed, the volume of net removed was estimated and recorded, and the same area was photographed again in the same way (“after” photos). A nearby (>50 m distant) paired control site was also photographed using the same method (“control” photos).
The photographs were processed using Agisoft Metashape software to generate orthomosaic images that were analyzed in ArcGIS for benthic cover using a random point approach. The number of points at net-impacted sites were constrained to the net coverage area and were scaled to the net area to ensure an equal point density among replicate net-impact sites. The same number of points were randomly assigned to the 3 × 3 m paired control site. Each point was classified into one of seven benthic categories: turf algae, macroalgae, sand, bare substrate, Porites compressa, sponge, or crustose coralline algae (CCA). The annotated points for each site were converted to percent cover for each benthic category. Fishing net size (sq m) and degree of fouling were also calculated from the orthophotos. Analyses were conducted to compare the benthic composition of net sites to control sites and to determine if fouling or net size contributed to these differences.
During the 2018 mission, only a subset of marine debris surveys resulted in a SfM survey. Fishing nets were located during swim surveys and selected for SfM if the net was interacting with coral or hard substrate, the depth of the net was within ~1–4 m of the surface, and the area of the net fit within the 9 sq. meter SFM survey plot. During a SFM survey, a permanent 3 x 3 m plot was established around the center of the fishing net, and the net was photographed using a back and forth swim pattern (“before” photos) for later processing using a SfM approach. The net was then removed, the volume of net removed was estimated and recorded, and the same area was photographed again in the same way (“after” photos). A nearby (>50 m distant) paired control site was also photographed using the same method (“control” photos).
The photographs were processed using Agisoft Metashape software to generate orthomosaic images that were analyzed in ArcGIS for benthic cover using a random point approach. The number of points at net-impacted sites were constrained to the net coverage area and were scaled to the net area to ensure an equal point density among replicate net-impact sites. The same number of points were randomly assigned to the 3 × 3 m paired control site. Each point was classified into one of seven benthic categories: turf algae, macroalgae, sand, bare substrate, Porites compressa, sponge, or crustose coralline algae (CCA). The annotated points for each site were converted to percent cover for each benthic category. Fishing net size (sq m) and degree of fouling were also calculated from the orthophotos. Analyses were conducted to compare the benthic composition of net sites to control sites and to determine if fouling or net size contributed to these differences.
Dataset Citation
- Cite as: Ecosystem Sciences Division, Pacific Islands Fisheries Science Center (2020). Benthic cover derived from structure from motion images collected during marine debris surveys at coral reef sites entangled with derelict fishing nets at Pearl and Hermes Atoll in the Northwestern Hawaiian Islands from 2018-09-24 to 2018-10-03 (NCEI Accession 0209247). https://www.ncei.noaa.gov/archive/accession/0209247. In Ecosystem Sciences Division, Pacific Islands Fisheries Science Center. Benthic cover and other related datasets derived from Structure-from-Motion (SfM) imagery of coral reef ecosystems in Pacific Islands Regions. [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/PIFSC-SfM-DerivedData. Accessed [date].
Dataset Identifiers
ISO 19115-2 Metadata
gov.noaa.nodc:0209247
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NOAA National Centers for Environmental Information +1-301-713-3277 ncei.info@noaa.gov |
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NOAA National Centers for Environmental Information ncei.info@noaa.gov |
Time Period | 2018-09-24 to 2018-10-03 |
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West: -175.8211335
East: -175.7880926
South: 27.82745706
North: 27.89404863
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Purpose | The purpose of the Structure from Motion (SfM) surveys at Pearl and Hermes Atoll is to quantify how derelict fishing nets alter the benthic community composition of the reef. In addition, we investigated how net size and fouling level may vary the severity of this impact. This study leveraged SfM, an emerging photogrammetry technique, to allow efficient data collection alongside marine debris survey and removal efforts. The Papahānaumokuākea Marine National Monument (PMNM) includes the 1200 nautical mile chain of atolls and islets known as the Northwestern Hawaiian Islands (NWHI) that are geographically positioned as a repository for marine debris. Marine debris circulates within the North Pacific Subtropical Gyre until it encounters the atolls of the NWHI. The Ecosystem Sciences Division (ESD) at NOAA Fisheries has conducted both ship- and shore-based missions in the NWHI to survey for and remove derelict fishing gear and many other types of marine debris. Exploratory and opportunistic efforts began in 1996 that evolved into ~annual cruises. |
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Last Modified: 2025-04-16T13:15:21Z
For questions about the information on this page, please email: ncei.info@noaa.gov
For questions about the information on this page, please email: ncei.info@noaa.gov