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National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across American Samoa from 2023-03-30 to 2023-08-09 (NCEI Accession 0290482)

Name: National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across American Samoa from 2023-03-30 to 2023-08-09 (NCEI Accession 0290482)
Published: 2024-04-03

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The data described here resulted from benthic photo-quadrat surveys conducted along transects at stratified random sites across American Samoa in 2023 as a part of Rapid Ecological Assessment (REA) surveys for corals and fish. Benthic habitat imagery was quantitatively analyzed using the web-based annotation tool CoralNet (Beijbom et al. 2016). Images were analyzed to produce three functional group levels of benthic cover: Benthic habitat images collected during photoquadrat surveys are quantitatively analyzed visually with the assistance of a web-based, machine-learning, image annotation tool, CoralNet. The robot tool annotates ten random points on each image for a total of 300 points per site, which are then reviewed by human analysts. The human annotations are then used to train the robot. This data is the final form of the robot-assisted human annotations.  Taxa identification occurs at three functional group levels of benthic cover. Tier 1 (e.g., coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Coral = massive hard coral, branching hard coral, foliose hard coral, encrusting hard coral, etc.; Macroalga = upright macroalgae), and Tier 3 (e.g., Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). If Tier 3 resolution is not possible, the next finest resolution is used.

A stratified random sampling (StRS) design was employed to survey the coral reef ecosystems across the region. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats in the 0-30 m depth range. The stratification scheme included island, reef zone, and depth. Sampling effort was allocated based on strata area and sites were randomly located within strata. Sites were surveyed using photo-quadrats along transects to collect benthic imagery to ultimately produce estimates of relative abundance (benthic cover), frequency of occurrence, benthic community taxonomic composition and relative generic richness.

The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than sampling more transects at a site. Therefore, site-level estimates and site to site comparisons should be used with caution.

Dataset Citation

Cite as: Ecosystem Sciences Division, Pacific Islands Fisheries Science Center (2024). National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across American Samoa from 2023-03-30 to 2023-08-09 (NCEI Accession 0290482). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0290482. Accessed [date].

Dataset Identifiers

ISO 19115-2 Metadata

gov.noaa.nodc:0290482

Full Text · XML

Download Data	HTTPS (download) Navigate directly to the URL for data access and direct download. FTP (download) These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP).
Distribution Formats	CSV
Ordering Instructions	Contact NCEI for other distribution options and instructions.
Distributor	NOAA National Centers for Environmental Information +1-301-713-3277 NCEI.Info@noaa.gov
Dataset Point of Contact	NOAA National Centers for Environmental Information ncei.info@noaa.gov

Time Period	2023-03-30 to 2023-08-09
Spatial Bounding Box Coordinates	West: -171.091706 East: -168.13797 South: -14.55976 North: -11.04531
Spatial Coverage Map

General Documentation

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Descriptive Information
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Associated Resources

National Coral Reef Monitoring Program: Benthic cover derived from analysis of images collected during stratified random surveys (StRS) across American Samoa
- NCEI Collection
  Navigate directly to the URL for data access and direct download.
Pacific Islands Fisheries Science Center, 2024: National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across American Samoa in 2015, 2018, and 2023
- https://www.fisheries.noaa.gov/inport/item/25274
  InPort Metadata Record
NOAA, Pacific Islands Fisheries Science Center, Ecosystem Sciences Division (2024). National Coral Reef Monitoring Program: Benthic Images Collected from Stratified Random Sites (StRS) across American Samoa from 2023-03-30 to 2023-08-09 (NCEI Accession 0289905). NOAA National Centers for Environmental Information. Dataset.
- https://www.ncei.noaa.gov/archive/accession/0289905
  NCEI Accession containing associated benthic imagery

gov.noaa.nodc:NCRMP-StRS-Images-AmSam

Publication Dates	publication: 2024-04-03
Data Presentation Form	Digital table - digital representation of facts or figures systematically displayed, especially in columns
Dataset Progress Status	Complete - production of the data has been completed Historical archive - data has been stored in an offline storage facility
Data Update Frequency	As needed
Supplemental Information	Submission Package ID: 5H5W7Y
Purpose	The National Coral Reef Monitoring Program (NCRMP) details a long-term approach to provide an ecosystem perspective via monitoring climate, fish, benthic, and socioeconomic variables in a consistent and integrated manner. The NCRMP is intended to coordinate various Coral Reef Conservation Coral Reef Program (CRCP) biological, physical, and human dimensions activities into a cohesive NOAA-wide effort. Through the implementation of the NCRMP, NOAA will be able to clearly and concisely communicate results of national-scale monitoring to national, state, and territorial policy makers, resource managers, and the public on a periodic basis. The National Coral Reef Monitoring Program (NCRMP) is a framework for conducting sustained observations of biological, climate, and socioeconomic indicators at 10 priority coral reefs across the U.S. and its territories. This integrated approach will consolidate monitoring of coral reefs under a uniform method in the Pacific, Atlantic, Caribbean, and the Gulf of Mexico for the first time. NCRMP is funded by the CRCP and supported by NOAA Fisheries, NOAA National Centers for Coastal Ocean Science (NCCOS), and many other partners. The Ecosystem Sciences Division at NOAA Fisheries is leading biological monitoring in the U.S. Pacific Islands Region. The biological component of NCRMP in the Pacific provides a triennial ecological characterization at a broad spatial scale of general reef condition for reef fishes, corals and benthic habitat (i.e., fish species composition/density/size, benthic cover, and coral density/size/condition). Innovative analysis techniques are then used to develop products that give fellow scientists, managers, decision makers and the public a better understanding of a region’s resources and how they are changing over time.
Use Limitations	accessLevel: Public Distribution liability: NOAA and NCEI make no warranty, expressed or implied, regarding these data, nor does the fact of distribution constitute such a warranty. NOAA and NCEI cannot assume liability for any damages caused by any errors or omissions in these data. If appropriate, NCEI can only certify that the data it distributes are an authentic copy of the records that were accepted for inclusion in the NCEI archives.

Dataset Citation	Cite as: Ecosystem Sciences Division, Pacific Islands Fisheries Science Center (2024). National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across American Samoa from 2023-03-30 to 2023-08-09 (NCEI Accession 0290482). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0290482. Accessed [date].
Cited Authors	Ecosystem Sciences Division, Pacific Islands Fisheries Science Center
Principal Investigators	Thomas A. Oliver US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
Contributors	US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
Resource Providers	Lori Luers US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center (NMFS/PIFSC)
Points of Contact	Lori Luers US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division
Publishers	NOAA National Centers for Environmental Information
Acknowledgments	Related Funding Agency: US DOC; NOAA; NOS; Coral Reef Conservation Program

Theme keywords	NODC DATA TYPES THESAURUS BENTHIC COMMUNITIES BENTHIC SPECIES BENTHIC SPECIES - TAXA COUNTS biological data CORAL CORAL - CENSUS CORAL - SPECIES IDENTIFICATION HABITAT - BENTHIC NODC OBSERVATION TYPES THESAURUS biological laboratory experiments visual estimate WMO_CategoryCode oceanography CoRIS Discovery Thesaurus Numeric Data Sets > Benthic CoRIS Theme Thesaurus EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat EARTH SCIENCE > Biosphere > Microbiota > Blue-green Algae EARTH SCIENCE > Biosphere > Vegetation > Algae > Algal Cover EARTH SCIENCE > Biosphere > Vegetation > Algae > Crustose Coralline Algae EARTH SCIENCE > Biosphere > Vegetation > Algae > Encrusting Macroalgae EARTH SCIENCE > Biosphere > Vegetation > Algae > Turf Algae EARTH SCIENCE > Biosphere > Zoology > Corals EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Baseline studies EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Quadrat Monitoring > Photograph Analysis EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect Monitoring > Belt Transect EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect Monitoring > Linear Transect (point) EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Benthos Analysis > Transect monitoring EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Biological EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Photographic Analysis EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Rapid Assessment Studies EARTH SCIENCE > Biosphere > Zoology > Mollusks > Tridacna EARTH SCIENCE > Biosphere > Zoology > Sponges EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Benthic biology EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Coral Cover EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Hard Coral Cover EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > OctoCoral Cover EARTH SCIENCE > Oceans > Marine Biology > Coral EARTH SCIENCE > Oceans > Marine Biology > Coral Communities EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Macroinvertebrates EARTH SCIENCE > Oceans > Marine Biology > Marine Plants > Seagrass Global Change Master Directory (GCMD) Science Keywords EARTH SCIENCE > BIOLOGICAL CLASSIFICATION EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > BENTHIC EARTH SCIENCE > OCEANS > COASTAL PROCESSES > CORAL REEFS EARTH SCIENCE > SOLID EARTH > GEOMORPHIC LANDFORMS/PROCESSES > COASTAL LANDFORMS > CORAL REEFS Provider Keywords REA Rapid Ecological Assessment robot-assisted annotations
Data Center keywords	NODC COLLECTING INSTITUTION NAMES THESAURUS US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division NODC SUBMITTING INSTITUTION NAMES THESAURUS US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center Contributing Data Centers CRED CREP Coral Reef Ecosystem Division Coral Reef Ecosystem Program ESD Ecosystem Sciences Division PIFSC Pacific Islands Fisheries Science Center RAMP Reef Assessment and Monitoring Program Global Change Master Directory (GCMD) Data Center Keywords DOC/NOAA/NMFS > National Marine Fisheries Service, NOAA, U.S. Department of Commerce DOC/NOAA/NMFS/PIFSC/ESD > Ecosystem Sciences Division, Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce
Platform keywords	NODC PLATFORM NAMES THESAURUS NOAA Ship Rainier Global Change Master Directory (GCMD) Platform Keywords Ships ICES/SeaDataNet Ship Codes RAINIER (call sign: WTEF, ICES code: 315R, 1968)
Instrument keywords	NODC INSTRUMENT TYPES THESAURUS photograph Provider Instruments CoralNet machine-learning algorithm
Place keywords	NODC SEA AREA NAMES THESAURUS National Marine Sanctuary of American Samoa Rose Atoll Marine National Monument South Pacific Ocean CoRIS Place Thesaurus COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > American Samoa (14S170W0000) COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Ofu Island (14S169W0013) COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Rose Atoll (14S168W0001) COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Swains Atoll (11S171W0001) COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Ta'u Island (14S169W0012) COUNTRY/TERRITORY > United States of America > American Samoa > American Samoa > Tutuila Island (14S170W0016) OCEAN BASIN > Pacific Ocean > American Samoa > American Samoa (14S170W0000) OCEAN BASIN > Pacific Ocean > American Samoa > Rose Atoll (14S168W0001) OCEAN BASIN > Pacific Ocean > American Samoa > Swains Atoll (11S171W0001) OCEAN BASIN > Pacific Ocean > American Samoa > Tutuila Island (14S170W0016) OCEAN BASIN > Pacific Ocean > Manu'a Group > Ofu Island (14S169W0013) OCEAN BASIN > Pacific Ocean > Manu'a Group > Ta'u Island (14S169W0012) Global Change Master Directory (GCMD) Location Keywords OCEAN > PACIFIC OCEAN > CENTRAL PACIFIC OCEAN > AMERICAN SAMOA OCEAN > PACIFIC OCEAN > SOUTH PACIFIC OCEAN
Project keywords	NODC PROJECT NAMES THESAURUS Coral Reef Conservation Program (CRCP) CORAL REEF STUDIES National Coral Reef Monitoring Program (NCRMP) CRCP Project 743 National Coral Reef Monitoring Program (NCRMP)
Keywords	NCEI ACCESSION NUMBER 0290482

Use Constraints	Cite as: Ecosystem Sciences Division, Pacific Islands Fisheries Science Center (2024). National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across American Samoa from 2023-03-30 to 2023-08-09 (NCEI Accession 0290482). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0290482. Accessed [date].
Access Constraints	Use liability: NOAA and NCEI cannot provide any warranty as to the accuracy, reliability, or completeness of furnished data. Users assume responsibility to determine the usability of these data. The user is responsible for the results of any application of this data for other than its intended purpose.
Fees	In most cases, electronic downloads of the data are free. However, fees may apply for custom orders, data certifications, copies of analog materials, and data distribution on physical media.

Lineage information for: dataset
Processing Steps	2024-04-03T12:27:33Z - NCEI Accession 0290482 v1.1 was published.
Output Datasets	NCEI Accession 0290482 v1.1 NCEI Accession 0290482 v1.1 (download) published 2024-04-03T12:27:33Z

Lineage information for: dataset
Processing Steps	Parameter or Variable: BENTHIC COMMUNITIES (measured); Units: unitless; Observation Category: visual estimate; Sampling Instrument: photograph; Sampling and Analyzing Method: Benthic habitat images collected during photoquadrat surveys are quantitatively analyzed visually with the assistance of a web-based, machine-learning, image annotation tool, CoralNet. The robot tool annotates ten random points on each image for a total of 300 points per site, which are then reviewed by human analysts. The human annotations are then used to train the robot. This data is the final form of the robot-assisted human annotations. Taxa identification occurs at three functional group levels of benthic cover. Tier 1 (e.g., coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Coral = massive hard coral, branching hard coral, foliose hard coral, encrusting hard coral, etc.; Macroalga = upright macroalgae), and Tier 3 (e.g., Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). If Tier 3 resolution is not possible, the next finest resolution is used.; Data Quality Method: ACCURACY: 1) Each analyst is required to complete training and a calibration exercise prior to image analysis (classification/annotation), and follows the Benthic Image Analysis Standard Operating Procedure (Lozada-Misa et al. 2017). For a calibration exercise, a subset of photos (~100-150) are selected from the production series and CoralNet assigns 10 random fixed points per photo. Each analyst classifies the same set of points for each of the photos used in the calibration exercise. The goal of the calibration exercise is to assess inter-observer variability. 2) Handheld GPS units were used to locate random sites and mark site locations. COMPLETENESS REPORT: The data set derived from the image analysis is as good as the images themselves; poor images with low contrast, inappropriate white balance, or out of focus may have to be discarded. Therefore, benthic estimates for some sites may derive from differing numbers of points between sites. Although the analysis process is statistically robust to allow for differing n (points) between sites, users should be aware of this limitation..

Lineage information for: dataset

Processing Steps

Parameter or Variable: BENTHIC COMMUNITIES (measured); Units: unitless; Observation Category: visual estimate; Sampling Instrument: photograph; Sampling and Analyzing Method: Benthic habitat images collected during photoquadrat surveys are quantitatively analyzed visually with the assistance of a web-based, machine-learning, image annotation tool, CoralNet. The robot tool annotates ten random points on each image for a total of 300 points per site, which are then reviewed by human analysts. The human annotations are then used to train the robot. This data is the final form of the robot-assisted human annotations. Taxa identification occurs at three functional group levels of benthic cover. Tier 1 (e.g., coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Coral = massive hard coral, branching hard coral, foliose hard coral, encrusting hard coral, etc.; Macroalga = upright macroalgae), and Tier 3 (e.g., Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). If Tier 3 resolution is not possible, the next finest resolution is used.; Data Quality Method: ACCURACY: 1) Each analyst is required to complete training and a calibration exercise prior to image analysis (classification/annotation), and follows the Benthic Image Analysis Standard Operating Procedure (Lozada-Misa et al. 2017). For a calibration exercise, a subset of photos (~100-150) are selected from the production series and CoralNet assigns 10 random fixed points per photo. Each analyst classifies the same set of points for each of the photos used in the calibration exercise. The goal of the calibration exercise is to assess inter-observer variability. 2) Handheld GPS units were used to locate random sites and mark site locations. COMPLETENESS REPORT: The data set derived from the image analysis is as good as the images themselves; poor images with low contrast, inappropriate white balance, or out of focus may have to be discarded. Therefore, benthic estimates for some sites may derive from differing numbers of points between sites. Although the analysis process is statistically robust to allow for differing n (points) between sites, users should be aware of this limitation..

Acquisition Information (collection)
Instrument	photograph
Platform	NOAA Ship Rainier

Last Modified: 2024-04-03T17:31:46Z
For questions about the information on this page, please email: ncei.info@noaa.gov

National Coral Reef Monitoring Program: Benthic Cover Derived from Analysis of Benthic Images Collected during Stratified Random Surveys (StRS) across American Samoa from 2023-03-30 to 2023-08-09 (NCEI Accession 0290482)

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